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Reply to: Caution in inferring viral strategies from abundance correlations in marine metagenomes
Felipe H. Coutinho
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C. B. Silveira
,
G. B. Gregoracci
,
C. C. Thompson
,
R. A. Edwards
,
C. P. D. Brussaard
,
B. E. Dutilh
,
F. L. Thompson
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Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes
Abstract This revision of the classification of eukaryotes follows that of Adl et al., 2012 [ J. Euk. Microbiol . 59(5)] and retains an …
Sina M. Adl
,
David Bass
,
Christopher E. Lane
,
Julius Lukeš
,
Conrad L. Schoch
,
Alexey Smirnov
,
Sabine Agatha
,
Cedric Berney
,
Matthew W. Brown
,
Fabien Burki
,
Paco Cárdenas
,
Ivan Čepička
,
Lyudmila Chistyakova
,
Javier del Campo
,
Micah Dunthorn
,
Bente Edvardsen
,
Yana Eglit
,
Laure Guillou
,
Vladimír Hampl
,
Aaron A. Heiss
,
Mona Hoppenrath
,
Timothy Y. James
,
Anna Karnkowska
,
Sergey Karpov
,
Eunsoo Kim
,
Martin Kolisko
,
Alexander Kudryavtsev
,
Daniel J.G. Lahr
,
Enrique Lara
,
Line Le Gall
,
Denis H. Lynn
,
David G. Mann
,
Ramon Massana
,
Edward A.D. Mitchell
,
Christine Morrow
,
Jong Soo Park
,
Jan W. Pawlowski
,
Martha J. Powell
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Daniel J. Richter
,
Sonja Rueckert
,
Lora Shadwick
,
Satoshi Shimano
,
Frederick W. Spiegel
,
Guifré Torruella
,
Noha Youssef
,
Vasily Zlatogursky
,
Qianqian Zhang
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Robust taxonomic classification of uncharted microbial sequences and bins with CAT and BAT
Abstract Current-day metagenomics analyses increasingly involve de novo taxonomic classification of long DNA sequences and …
F. A. Bastiaan Von Meijenfeldt
,
Ksenia Arkhipova
,
Diego D. Cambuy
,
Felipe H. Coutinho
,
Bas E. Dutilh
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Trends of Microdiversity Reveal Depth-Dependent Evolutionary Strategies of Viruses in the Mediterranean
Viruses are extremely abundant and diverse biological entities that contribute to the functioning of marine ecosystems. Despite their …
Felipe H. Coutinho
,
Riccardo Rosselli
,
Francisco Rodríguez-Valera
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UCYN-A3, a newly characterized open ocean sublineage of the symbiotic N2-fixing cyanobacterium *Candidatus* Atelocyanobacterium thalassa
Summary The symbiotic unicellular cyanobacterium Candidatus Atelocyanobacterium thalassa (UCYN-A) is one of the most abundant and …
Fran Cornejo-Castillo
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Maria Del Carmen Muñoz-Marín
,
Kendra A. Turk-Kubo
,
Marta Royo-Llonch
,
Hanna Farnelid
,
Silvia G. Acinas
,
Jonathan P. Zehr
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Visualization is crucial for understanding microbial processes in the ocean
Recent developments in community and single-cell genomic approaches have provided an unprecedented amount of information on the ecology …
Marta Sebastián
,
Josep M. Gasol
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Diatom diversity through HTS-metabarcoding in coastal European seas
Abstract Diatoms constitute a diverse lineage of unicellular organisms abundant and ecologically important in aquatic ecosystems. …
Roberta Piredda
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Jean-Michel Claverie
,
Johan Decelle
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Colomban De Vargas
,
Micah Dunthorn
,
Bente Edvardsen
,
Wenche Eikrem
,
Dominik Forster
,
Wiebe H C F Kooistra
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Ramiro Logares
,
Ramon Massana
,
Marina Montresor
,
Fabrice Not
,
Hiroyuki Ogata
,
Jan Pawlowski
,
Sarah Romac
,
Diana Sarno
,
Thorsten Stoeck
,
Adriana Zingone
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Constant abundances of ubiquitous uncultured protists in the open sea assessed by automated microscopy
Summary Protists have fundamental ecological roles in marine environments and their diversity is being increasingly explored, yet …
Jean-François Mangot
,
Irene Forn
,
Aleix Obiol
,
Ramon Massana
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Factors controlling the community structure of picoplankton in contrasting marine environments
Abstract. The effect of inorganic nutrients on planktonic assemblages has traditionally relied on concentrations rather than estimates …
Jose Luis Otero-Ferrer
,
Pedro Cermeño
,
Antonio Bode
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Bieito Fernández-Castro
,
Josep M. Gasol
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Xosé Anxelu G Morán
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Emilio Marañon
,
Victor Moreira-Coello
,
Marta M Varela
,
Marina Villamaña
,
Beatriz Mouriño-Carballido
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B Vitamins and Their Congeners as Potential Drivers of Microbial Community Composition in an Oligotrophic Marine Ecosystem
Abstract Determining the factors that influence marine microbial growth and community structure are critical for the understanding of …
C. P. Suffridge
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Laura Gómez-Consarnau
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D. R. Monteverde
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L. Cutter
,
Javier Arístegui
,
Xosé Antón Álvarez-Salgado
,
Josep M. Gasol
,
S. A. Sañudo-Wilhelmy
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