Marine picoplankton metagenomes and MAGs from eleven vertical profiles obtained by the Malaspina Expedition

Abstract

The Ocean microbiome has a crucial role in Earth’s biogeochemical cycles. During the last decade, global cruises such as Tara Oceans and the Malaspina Expedition have expanded our understanding of the diversity and genetic repertoire of marine microbes. Nevertheless, there are still knowledge gaps regarding their diversity patterns throughout depth gradients ranging from the surface to the deep ocean. Here we present a dataset of 76 microbial metagenomes (MProfile) of the picoplankton size fraction (0.2–3.0 µm) collected in 11 vertical profiles covering contrasting ocean regions sampled during the Malaspina Expedition circumnavigation (7 depths, from surface to 4,000 m deep). The MProfile dataset produced 1.66 Tbp of raw DNA sequences from which we derived: 17.4 million genes clustered at 95% sequence similarity (M-GeneDB-VP), 2,672 metagenome-assembled genomes (MAGs) of Archaea and Bacteria (Malaspina-VP-MAGs), and over 100,000 viral genomic sequences. This dataset will be a valuable resource for exploring the functional and taxonomic connectivity between the photic and bathypelagic tropical and sub-tropical ocean, while increasing our general knowledge of the Ocean microbiome.

Pablo Sánchez
Pablo Sánchez
Staff scientist

Bioinformatician interested in genomics of marine prokaryotic communities

Felipe H. Coutinho
Felipe H. Coutinho
Staff scientist
Marta Sebastián
Marta Sebastián
Staff scientist
Massimo C. Pernice
Massimo C. Pernice
Postdoctoral scientist
Fran Cornejo-Castillo
Fran Cornejo-Castillo
Staff scientist
Xabier López-Alforja
Xabier López-Alforja
Predoctoral scientist
Ramiro Logares
Ramiro Logares
Staff scientist
Maria M. Sala
Maria M. Sala
Staff scientist
Dolors Vaqué
Dolors Vaqué
Staff scientist
Ramon Massana
Ramon Massana
Staff scientist

I am microbial ecologists with a deep interest in protist ecology and evolution

Silvia G. Acinas
Silvia G. Acinas
Staff scientist
Josep M. Gasol
Josep M. Gasol
Staff scientist